To show SBML support in Morpheus as of version 2.1 in practice, we give a step-by-step example of how to download, import and extend an SBML model.
1. Get an SBML Model from BioModels First, we browse the BioModels model repository and select a model.
Morpheus Model ID: M0004 Open in Morpheus History Persistent Identifier Use this permanent link to cite or share this Morpheus model:
Copy Introduction This example model cell fate decisions during early patterning of the pancreas (de Back et al.
Let’s go through an example. We’ll construct a model in which an
intracellular cell cycle network (ODE) regulates the division of motile cells which (CPM) release a diffusive cytokine (PDE) which, in turn, controls the cell cycle (ODE).
At this point, you may be asking yourself:
‘All nice and well, but how can I control the relative time scales between the various models?’
And I’d respond:
“What is the difference between an Equation, a Rule and a Function ?”
All three are algebraic expressions, however:
An Equation is an equality relation the simulator is expected to keep throughout simulation time.