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System
Equation vs. Rule vs. Function
‘What is the difference between an
Equation
, a
Rule
and a
Function
?’
Step-by-Step Example
To show SBML support in Morpheus as of version 2.1 in practice, we give a step-by-step example of how to download, import and extend an SBML model. 1. Get an SBML Model from BioModels First, we browse the BioModels model repository and select a model.
Coupled ODE Lattice: Lateral Signaling
Morpheus Model ID: M0004 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
W. de Back
,
J. X. Zhou
,
L. Brusch
(Authors)
Example
Let’s go through an example. We’ll construct a model in which an intracellular cell cycle network (ODE) regulates the division of motile cells which (CPM) release a diffusive cytokine (PDE) which, in turn, controls the cell cycle (ODE).
Relative Time Scales
At this point, you may be asking yourself: ‘All nice and well, but how can I control the relative time scales between the various models?’ And I’d respond:
Cite
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