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Publication
Morpheus at Recent & Upcoming Events
Informatik Festival 2026
Under the theme of ‘Digital Resilience’, the 2026 GI Annual Conference at TU Dresden will explore how digital infrastructures, applications and organisations…
Tue, 22 Sep 2026 09:00 +0200 — Fri, 25 Sep 2026 18:00 +0200
TUD Dresden University of Technology, Andreas-Pfitzmann-Bau, Germany
Selected Publications
Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures
Pathogens face varying microenvironments in vivo, but suitable experimental systems and analysis tools to dissect how three-dimensional …
A. Imle
,
P. Kumberger
,
N. D. Schnellbächer
,
J. Fehr
,
P. Carrillo-Bustamante
,
J. Ales
,
P. Schmidt
,
C. Ritter
,
W. J. Godinez
,
B. Müller
,
K. Rohr
,
F. A. Hamprecht
,
U. S. Schwarz
,
F. Graw
,
O. T. Fackler
PDF
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DOI
Selected Publications
Perspective: The promise of multi-cellular engineered living systems
Recent technological breakthroughs in our ability to derive and differentiate induced pluripotent stem cells, organoid biology, …
R. D. Kamm
,
R. Bashir
,
N. Arora
,
R. D. Dar
,
M. U. Gillette
,
L. G. Griffith
,
M. L. Kemp
,
K. Kinlaw
,
M. Levin
,
A. C. Martin
,
T. C. McDevitt
,
R. M. Nerem
,
M. J. Powers
,
T. A. Saif
,
J. Sharpe
,
S. Takayama
,
S. Takeuchi
,
R. Weiss
,
K. Ye
,
H. G. Yevick
,
M. H. Zaman
PDF
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DOI
Posts
Morpheus in Bioinformatics
An article on Morpheus is now available as an application note in Bioinformatics. Read the open access paper or see the list of publications.
Last updated on Wed, 03 Feb 2021
1 min read
Publications
Selected Publications
Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology
Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualization, archiving and batch processing.
J. Starruß
,
W. de Back
,
L. Brusch
,
A. Deutsch
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DOI
Selected Publications
Early Embryonic Vascular Patterning by Matrix-Mediated Paracrine Signalling: A Mathematical Model Study
During embryonic vasculogenesis, endothelial precursor cells of mesodermal origin known as angioblasts assemble into a characteristic …
A. Köhn-Luque
,
W. de Back
,
J. Starruß
,
A. Mattiotti
,
A. Deutsch
,
J. M. Pérez-Pomares
,
M. A. Herrero
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DOI
Example
Selected Publications
A New Mechanism for Collective Migration in Myxococcus xanthus
Myxobacteria exhibit a complex life cycle characterized by a sequence of cell patterns that culminate in the formation of …
J. Starruß
,
T. Bley
,
L. Søgaard-Andersen
,
A. Deutsch
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DOI
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