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ODE
Time Scales
‘How can I specify time scales?’
ODE Model: Cell Cycle
Morpheus Model ID: M0001 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
T. Y. Tsai
,
Q. Yang
(Authors)
1D PDE Barkley Model
Derived from the seminal Hodgkin-Huxley and FitzHugh-Nagumo models, the Barkley model is probably the simplest continuous model for excitable media. It replaces the cubic term in the FitzHugh-Nagumo model with a piece-wise linear term as a simplification that enables fast simulation.
Try the Examples
Examples Menu To explore the potential and modeling features, it is the best to learn by example. Morpheus comes with a range of fully functional example models showcasing a number of model formalism and modeling features.
Step-by-Step Example
To show SBML support in Morpheus as of version 2.1 in practice, we give a step-by-step example of how to download, import and extend an SBML model. 1. Get an SBML Model from BioModels First, we browse the BioModels model repository and select a model.
SBML Import: MAPK Signaling
Morpheus Model ID: M0002 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
B. N. Kholodenko
(Author)
Delay Differential Equations: Cell Cycle
Morpheus Model ID: M0003 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
T. Y. Tsai
,
Q. Yang
(Authors)
Coupled ODE Lattice: Lateral Signaling
Morpheus Model ID: M0004 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
W. de Back
,
J. X. Zhou
,
L. Brusch
(Authors)
A Multiscale Mini Model
A Word on the Word ‘Multiscale’ First, let’s clarify what we mean by the somewhat hyped term ‘multiscale’. Generally, the term refers to mathematical and computational models that simultaneously describe processes at multiple time and spatial scales.
Predator-Prey Model by Rosenzweig
Morpheus Model ID: M0005 Open in Morpheus History Model File All Files Persistent Identifier Use this permanent link to cite or share this Morpheus model:
M. L. Rosenzweig
(Author)
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