Publications

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. Perspective: The promise of multi-cellular engineered living systems. APL Bioengineering, 2018.

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. pSSAlib: The partial-propensity stochastic chemical network simulator.. PLoS computational biology, 2017.

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. Multiscalar cellular automaton simulates in-vivo tumour-stroma patterns calibrated from in-vitro assay data.. BMC medical informatics and decision making, 2017.

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. Comparing individual-based approaches to modelling the self-organization of multicellular tissues.. PLoS computational biology, 2017.

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. An individual-based model for collective cancer cell migration explains speed dynamics and phenotype variability in response to growth factors.. NPJ systems biology and applications, 2017.

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. A dynamically diluted alignment model reveals the impact of cell turnover on the plasticity of tissue polarity patterns.. Journal of the Royal Society, Interface, 2017.

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. A cell-based mechanical model of coronary artery tunica media.. Journal of the Royal Society, Interface, 2017.

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. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.. Bioinformatics (Oxford, England), 2016.

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. Biocellion: accelerating computer simulation of multicellular biological system models.. Bioinformatics (Oxford, England), 2014.

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