This is the fourth bug fix release of the 2.3 series.

MorpheusML was extended by two valuable features: event logging for all condition triggered events (Event, CellDivision, …), and a classic mode for CPM neighborhood configurations that mimics the setup chosen by e.g. CompuCell3D and thus makes CC3D parametrizations directly applicable.

The simulator was extended by expression defined domains and the flux boundaries of domains were fixed. Also, snapshotting simulation states during simulation had several bugs fixes

See the blog post and the changelog for details.

Downloads

Linux

APT Package Manager

Download the appropriate package for your distribution:

• Ubuntu:
  • Ubuntu 20.04 LTS ‘Focal Fossa’
  • Ubuntu 22.04 LTS ‘Jammy Jellyfish’
  • Ubuntu 22.10 ‘Kinetic Kudu’
• Debian:
  • Debian 10 ‘Buster’
  • Debian 11 ‘Bullseye’
• Static:
  • Static Linux binary (simulator w/o GUI)

Use APT to install with dependencies:

sudo apt install ./morpheus_2.3.4.deb

Build from Source

Run the following commands to build Morpheus from source:

git clone https://gitlab.com/morpheus.lab/morpheus.git morpheus
cd morpheus
git checkout v2.3.4
mkdir build
cd build
cmake ..
make && sudo make install

For dependencies and further build instructions, see the README.md in our GitLab repository.

macOS

Homebrew Package Manager

Morpheus is available for macOS 11 ‘Big Sur’ and above via Homebrew.

Install

1. Install Homebrew.

2. Install Morpheus by pasting the following commands in a macOS Terminal (depending on your system, this may take a few minutes):

   brew tap morpheus-lab/morpheus-versions
   brew install morpheus@2.3.4

3. Start the Morpheus GUI with the command:

   morpheus-gui

4. Optional: To access Morpheus conveniently from your Mac’s ‘Applications’ folder, add a Morpheus.app shortcut by typing:

   ln -sf $(brew --prefix)/opt/morpheus/Morpheus.app /Applications

Build from Source

Run the following commands to build Morpheus from source:

git clone https://gitlab.com/morpheus.lab/morpheus.git morpheus
cd morpheus
git checkout v2.3.4
mkdir build
cd build
cmake ..
make && sudo make install

For dependencies and further build instructions, see the README.md in our GitLab repository.

Windows

Windows Installer

On Windows, Morpheus is made available through a Windows installer:

• Morpheus-2.3.4.exe