Morpheus 2.3.4

This is the fourth bug fix release of the 2.3 series.

MorpheusML was extended by two valuable features: event logging for all condition triggered events (Event, CellDivision, …), and a classic mode for CPM neighborhood configurations that mimics the setup chosen by e.g. CompuCell3D and thus makes CC3D parametrizations directly applicable.

The simulator was extended by expression defined domains and the flux boundaries of domains were fixed. Also, snapshotting simulation states during simulation had several bugs fixes

See the blog post and the changelog for details.

Downloads

Operating system	Package	Notes
	Morpheus-2.3.4.exe	Windows installer
	Via Homebrew	Installation Install Homebrew Install Morpheus by pasting the following commands in a macOS Terminal (depending on your system, this may take a few minutes): brew tap morpheus-lab/morpheus brew install morpheus Start the Morpheus GUI with command: morpheus-gui Optional: Follow the instructions shown at the end of the installation to also be able to conveniently open Morpheus.app from the ‘Applications’ folder. Advanced installation options: See FAQ. Upgrade If you have already installed Morpheus with Homebrew in the past, simply upgrade to the latest version with: brew upgrade morpheus
	Debian Buster Debian Bullseye Ubuntu 20.04 Ubuntu 22.04 Ubuntu 22.10 Static linux binary (Simulator w/o GUI)	Install with debian package manager. Use apt to install with dependencies: sudo apt install ./morpheus_2.3.4.deb Or use alien to convert to non-debian packages.

Or build from source

git clone https://gitlab.com/morpheus.lab/morpheus.git morpheus
cd morpheus
git checkout v2.3.4
mkdir build
cd build
cmake ..
make && sudo make install

See the README.md at the GitLab repository for dependencies and build instructions.