A modeling and simulation environment for the study of multi-scale and multicellular systems.
Some of its key features are:
Morpheus is developed by Jörn Starruß (), Walter de Back (), Lutz Brusch (), Cedric Unverricht (), Robert Müller () and Diego Jahn () at the Center for Information Services and High Performance Computing, TU Dresden, Germany.
Morpheus development is supported by
Meet us and Morpheus at these talks, workshops and courses
Get Morpheus package or build from source
…of what you can do with Morpheus
Explore a huge variety of Morpheus models, including contributed and published models, in our extensive model repository.
Ordinary differential equations | |||
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Reaction-diffusion systems | |||
Cellular Potts models | |||
Multi-scale models | |||
We’ve developed a set of courses that take you from installation to expert topics in small steps, fully illustrated with screenshots, stuffed with tips & tricks and further exercises.
Take a first glance at Morpheus. We will take a look at the user interface and run some example models.
Morpheus supports almost all of the SBML core standard. And has been validated on the extensive SBML test suite.
How to create a minimal multiscale model combining ODE, PDE and CPM models.
Convert a 1D PDE model into 2D and 3D multiscale tissue models.
How to export the cell division history and using external analysis tools.
Please cite this reference when you used Morpheus in your work and to support the further development of Morpheus.
J. Starruß, W. de Back, L. Brusch and A. Deutsch. Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology. Bioinformatics, 30 (9): 1331-1332, 2014.
Morpheus is a modeling environment for the simulation and integration of cell-based models with ordinary differential equations and reaction-diffusion systems. It allows rapid development of multiscale models in biological terms and mathematical expressions rather than programming code. Its graphical user interface supports the entire workflow from model construction and simulation to visualization, archiving and batch processing.
Morpheus Users Worldwide
Have a look at the places where Morpheus is cited.
For a complete list of more than 260 articles citing Morpheus, click here.
Docs, FAQ, Help and Contact
Morpheus has documentation right within the graphical user interface:
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